<?xml version='1.0' encoding='UTF-8'?>

<msms_pipeline_analysis date="2011-09-18T02:11:34" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v115.xsd">
<msms_run_summary>
<search_summary base_name="D:\Ksenia\Leiden\aftermath\example" search_engine="MS-GFDB" />
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<search_hit calc_neutral_pep_mass="2891.28650" hit_rank="1" massdiff="0.003772" peptide="TIQNSSVSPTSSSSSSSSTGETQTQSSSR" peptide_next_aa="L" peptide_prev_aa="K" protein="IPI:IPI00002349.2|SWISS-PROT:Q7Z417|TREMBL:A1L3A7|ENSEMBL:ENSP00000225388|REFSEQ:NP_065823|H-INV:HIT000001036|VEGA:OTTHUMP00000181037" protein_descr="Tax_Id=9606 Gene_Symbol=NUFIP2 Nuclear fragile X mental retardation-interacting protein 2">
<search_score name="DeNovoScore" value="190" />
<search_score name="MSGFScore" value="181" />
<search_score name="SpecProb" value="9.380133E-30" />
<search_score name="P-value" value="2.9333857E-22" />
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query assumed_charge="2" end_scan="3671" precursor_neutral_mass="2224.937048" spectrum="090121_NM_Trypsin_20.03671.03671.2" start_scan="3671">
<search_result>
<search_hit calc_neutral_pep_mass="2224.93578" hit_rank="1" massdiff="0.001268" peptide="VGPADDGPAPSGEEEGEGGGEAGGK" peptide_next_aa="E" peptide_prev_aa="R" protein="IPI:IPI00016725.2|SWISS-PROT:Q9UKN8|TREMBL:B3KNH2;Q05CN7|ENSEMBL:ENSP00000361219|REFSEQ:NP_036336|H-INV:HIT000071196|VEGA:OTTHUMP00000022434" protein_descr="Tax_Id=9606 Gene_Symbol=GTF3C4 General transcription factor 3C polypeptide 4">
<search_score name="DeNovoScore" value="162" />
<search_score name="MSGFScore" value="158" />
<search_score name="SpecProb" value="1.9912463E-28" />
<search_score name="P-value" value="6.0892146E-21" />
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query assumed_charge="3" end_scan="3031" precursor_neutral_mass="1951.924392" spectrum="090121_NM_Trypsin_20.03031.03031.3" start_scan="3031">
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<search_hit calc_neutral_pep_mass="1951.92103" hit_rank="1" massdiff="0.003362" peptide="GAAAAAAASGAAGGGGGGAGAGAPGGGR" peptide_next_aa="L" peptide_prev_aa="K" protein="IPI:IPI00644073.1|VEGA:OTTHUMP00000038687" protein_descr="Tax_Id=9606 Gene_Symbol=INTS3 18 kDa protein">
<search_score name="DeNovoScore" value="214" />
<search_score name="MSGFScore" value="202" />
<search_score name="SpecProb" value="6.7318633E-28" />
<search_score name="P-value" value="2.093763E-20" />
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query assumed_charge="2" end_scan="19088" precursor_neutral_mass="2396.168648" spectrum="090121_NM_Trypsin_20.19088.19088.2" start_scan="19088">
<search_result>
<search_hit calc_neutral_pep_mass="2396.14381" hit_rank="1" massdiff="0.024838" peptide="VNFSPPGDTNSLFPGTWYLER" peptide_next_aa="V" peptide_prev_aa="K" protein="IPI:IPI00945760.1|TREMBL:B7Z784;B7Z7M8;B7Z8R3|REFSEQ:NP_001159579" protein_descr="Tax_Id=9606 Gene_Symbol=HMGCS2 hydroxymethylglutaryl-CoA synthase, mitochondrial isoform 2 precursor">
<search_score name="DeNovoScore" value="243" />
<search_score name="MSGFScore" value="243" />
<search_score name="SpecProb" value="2.9611275E-27" />
<search_score name="P-value" value="8.838129E-20" />
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query assumed_charge="3" end_scan="3030" precursor_neutral_mass="1951.924392" spectrum="090121_NM_Trypsin_20.03030.03030.3" start_scan="3030">
<search_result>
<search_hit calc_neutral_pep_mass="1951.92103" hit_rank="1" massdiff="0.003362" peptide="GAAAAAAASGAAGGGGGGAGAGAPGGGR" peptide_next_aa="L" peptide_prev_aa="K" protein="IPI:IPI00644073.1|VEGA:OTTHUMP00000038687" protein_descr="Tax_Id=9606 Gene_Symbol=INTS3 18 kDa protein">
<search_score name="DeNovoScore" value="389" />
<search_score name="MSGFScore" value="389" />
<search_score name="SpecProb" value="7.508096E-33" />
<search_score name="P-value" value="2.335189E-25" />
</search_hit>
</search_result>
</spectrum_query>
</msms_run_summary>
</msms_pipeline_analysis>

